idiogramFISH - Shiny App. Idiograms with Marks and Karyotype Indices
Plot idiograms of karyotypes, plasmids, circular chr.
having a set of data.frames for chromosome data and optionally
mark data. Two styles of chromosomes can be used: without or
with visible chromatids. Supports micrometers, cM and Mb or any
unit. Three styles of centromeres are available: triangle,
rounded and inProtein; and six styles of marks are available:
square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow
(downArrow), exProtein (inProtein); its legend (label) can be
drawn inline or to the right of karyotypes. Idiograms can also
be plotted in concentric circles. It is possible to calculate
chromosome indices by Levan et al. (1964)
<doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of
Watanabe et al. (1999) <doi:10.1007/PL00013869> and
Romero-Zarco (1986) <doi:10.2307/1221906> and classify
chromosomes by morphology Guerra (1986) and Levan et al.
(1964).
